STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3832KEGG: ccs:CCNA_00326 vegetatible incompatibility protein HET-E-1. (343 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.819
Cseg_3990
Bis(5'nucleosyl)-tetraphosphatase, ApaH; PFAM: metallophosphoesterase; KEGG: ccs:CCNA_00167 bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
   
 0.786
Cseg_1843
PFAM: peptidase M56 BlaR1; Ankyrin; KEGG: ccs:CCNA_01711 transcriptional regulator.
   
 0.784
Cseg_3563
KEGG: ccs:CCNA_00854 metallo-beta-lactamase protein.
    
 0.783
Cseg_4133
KEGG: ccs:CCNA_03759 mRNA 3'-end processing factor.
    
 0.783
Cseg_1372
PFAM: Tetratricopeptide TPR_4; KEGG: ccs:CCNA_02137 endoglucanase H.
   
 0.769
Cseg_1616
Beta-lactamase; KEGG: sml:Smlt0115 putative beta-lactamase precursor (cephalosporinase); PFAM: beta-lactamase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat.
   
 0.769
Cseg_2546
KEGG: kko:Kkor_1250 hypothetical protein.
   
 0.769
Cseg_4138
KEGG: ccs:CCNA_03763 deacetylase; PFAM: histone deacetylase superfamily.
    
 0.744
Cseg_1336
PFAM: protein of unknown function DUF214; KEGG: ccs:CCNA_02172 transporter.
  
     0.648
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.