STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3834Hypothetical protein; KEGG: pfo:Pfl01_4199 signal transduction protein. (286 aa)    
Predicted Functional Partners:
Cseg_3990
Bis(5'nucleosyl)-tetraphosphatase, ApaH; PFAM: metallophosphoesterase; KEGG: ccs:CCNA_00167 bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
    
 0.821
Cseg_1843
PFAM: peptidase M56 BlaR1; Ankyrin; KEGG: ccs:CCNA_01711 transcriptional regulator.
    
 0.788
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.763
Cseg_0978
PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: ccs:CCNA_02889 peptidyl-prolyl cis-trans isomerase.
   
 
 0.680
Cseg_4125
PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: ccs:CCNA_03751 peptidyl-prolyl cis-trans isomerase.
   
 
 0.680
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 
 0.663
argD
KEGG: ccs:CCNA_02326 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
    
 
 0.630
Cseg_1121
PFAM: FAD dependent oxidoreductase; KEGG: ccs:CCNA_02652 cyclohexanone monooxygenase.
    
 
 0.561
Cseg_1648
PFAM: thiamine biosynthesis Thi4 protein; KEGG: ccs:CCNA_01410 cyclohexanone monooxygenase.
    
 
 0.561
Cseg_3592
PFAM: flavin-containing monooxygenase FMO; KEGG: ccs:CCNA_00813 dimethylaniline monooxygenase (N-oxide forming).
    
 
 0.561
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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