STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3860Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: ccs:CCNA_00297 two-component response regulator. (268 aa)    
Predicted Functional Partners:
Cseg_2067
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: ote:Oter_2330 signal transduction histidine kinase, LytS.
 
 
 0.843
Cseg_3859
KEGG: ccs:CCNA_00298 hypothetical protein.
 
     0.759
Cseg_3188
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: ccr:CC_0551 hypothetical protein.
  
     0.533
Cseg_3861
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: ccs:CCNA_02945 PAS-family sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
     
 0.518
purD
TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: ccs:CCNA_00299 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; Belongs to the GARS family.
       0.498
Cseg_1826
KEGG: ccs:CCNA_00607 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.475
Cseg_3139
KEGG: ccs:CCNA_00573 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.466
Cseg_0962
PFAM: peptidase M28; KEGG: ccs:CCNA_02933 aminopeptidase.
  
     0.461
Cseg_2794
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ccs:CCNA_02545 alkaline phosphatase.
  
     0.421
Cseg_3550
KEGG: ccs:CCNA_03160 molybdopterin-guanine dinucleotide biosynthesis protein A.
 
     0.410
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.