STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3868PFAM: Autotransporter beta- domain protein; KEGG: ccs:CCNA_00290 autotransporter protein. (1100 aa)    
Predicted Functional Partners:
Cseg_3931
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_00224 hypothetical protein.
  
 
   0.772
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
 
     0.740
Cseg_2884
KEGG: ccs:CCNA_02316 hypothetical protein.
  
     0.728
Cseg_0174
KEGG: ccs:CCNA_00236 hypothetical protein.
  
     0.709
Cseg_1944
KEGG: ccs:CCNA_01532 regulatory protein FlaY.
  
     0.707
Cseg_0553
KEGG: ccs:CCNA_00519 hypothetical protein.
  
     0.706
Cseg_2564
PFAM: asparagine synthase; KEGG: cak:Caul_1986 asparagine synthase.
  
     0.706
Cseg_0997
PFAM: protein of unknown function DUF805; KEGG: ccs:CCNA_02866 hypothetical protein.
  
     0.702
Cseg_4042
PFAM: diacylglycerol kinase catalytic region; KEGG: ccs:CCNA_03670 diacylglycerol kinase catalytic region.
 
     0.679
Cseg_0133
KEGG: ccs:CCNA_03665 hypothetical protein.
  
   
 0.674
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.