STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3871TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold domain protein; ATP-binding region ATPase domain protein; KEGG: ccs:CCNA_00287 photosensory histidine protein kinase LovK; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein. (366 aa)    
Predicted Functional Partners:
Cseg_3872
KEGG: ccs:CCNA_00286 two-component receiver domain protein LovR; PFAM: response regulator receiver; SMART: response regulator receiver.
 
   
 0.960
Cseg_3466
KEGG: bxe:Bxe_B0221 GAF sensor hybrid histidine kinase; PFAM: HWE histidine kinase; MASE1 domain protein; GAF domain protein; SMART: GAF domain protein.
 
0.951
Cseg_1034
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: ccs:CCNA_02752 GAF/PAS-family histidine kinase/receiver protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; response regulator receiver.
 
 
 0.853
Cseg_1706
PFAM: GAF domain protein; KEGG: bgl:bglu_1g18320 diguanylate cyclase.
  
 
 0.787
Cseg_0547
KEGG: cak:Caul_4330 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 
 0.777
Cseg_1135
KEGG: ccs:CCNA_02637 PAS-family sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein.
   
 0.770
Cseg_4037
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: response regulator receiver; KEGG: cak:Caul_0089 two-component response regulator; SMART: response regulator receiver.
 
 
 0.766
Cseg_0878
TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; KEGG: ccs:CCNA_00879 PAS-family sensor histidine kinase; SMART: PAC repeat-containing protein; PAS domain containing protein.
   
 0.756
Cseg_3504
TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; GAF domain protein; KEGG: mrd:Mrad2831_3331 signal transduction histidine kinase; SMART: GAF domain protein; PAC repeat-containing protein.
   
 0.739
Cseg_1116
KEGG: ccs:CCNA_02659 two-component receiver domain protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 
 0.722
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.