STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3917PFAM: MaoC domain protein dehydratase; KEGG: ccs:CCNA_03613 3-hydroxybutyryl-CoA dehydratase. (150 aa)    
Predicted Functional Partners:
Cseg_1680
poly(R)-hydroxyalkanoic acid synthase, class I; KEGG: ccs:CCNA_01444 poly(3-hydroxyalkanoate) polymerase; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold.
 
  
 0.934
Cseg_1652
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_01414 3-hydroxyisobutyryl-CoA hydrolase.
  
 0.930
Cseg_3787
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_00358 delta 3,5-delta2,4-dienoyl-CoA isomerase precursor.
  
 0.930
Cseg_4266
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_00006 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.930
Cseg_1964
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_01794 enoyl-CoA hydratase/isomerase family.
  
 0.927
Cseg_3646
crotonyl-CoA reductase; KEGG: ccs:CCNA_03181 alcohol dehydrogenase; TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
 
 0.922
Cseg_0393
KEGG: ccs:CCNA_00545 acetoacetyl-CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR.
  
  0.915
Cseg_3677
PFAM: MaoC domain protein dehydratase; KEGG: ccs:CCNA_00741 3-hydroxybutyryl-CoA dehydratase.
  
  
 
0.904
Cseg_1913
PFAM: protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: ccs:CCNA_01498 DNA-dependent DNA polymerase III subunit alpha.
  
 
 0.643
Cseg_3916
KEGG: cak:Caul_4672 potassium efflux system protein; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
       0.615
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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