STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3967PFAM: aldo/keto reductase; KEGG: cak:Caul_4616 aldo/keto reductase. (334 aa)    
Predicted Functional Partners:
Cseg_3964
PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_00191 N-acetylglutamate synthase domain protein.
  
    0.662
Cseg_3965
KEGG: ank:AnaeK_1617 hypothetical protein.
       0.648
Cseg_3966
PFAM: thioesterase superfamily protein; KEGG: pzu:PHZ_c0100 phenylacetic acid degradation-related protein.
       0.648
Cseg_0253
PFAM: aldo/keto reductase; KEGG: ccs:CCNA_03541 2,5-diketo-D-gluconic acid reductase.
 
 
0.574
Cseg_3968
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cak:Caul_4617 LysR family transcriptional regulator.
       0.529
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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