STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3976PFAM: Zinc finger, CHCC-type; KEGG: cak:Caul_4186 hypothetical protein. (94 aa)    
Predicted Functional Partners:
Cseg_3975
PFAM: thioesterase superfamily protein; KEGG: ccr:CC_0190 cytosolic long-chain acyl-CoA thioester hydrolase family protein.
       0.785
Cseg_0625
KEGG: ccs:CCNA_03405 hypothetical protein; TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein.
  
     0.656
Cseg_4028
KEGG: ccs:CCNA_03583 hypothetical protein.
  
     0.630
Cseg_3977
KEGG: ccs:CCNA_00188 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.619
Cseg_4240
KEGG: ccs:CCNA_03864 cytosolic protein.
  
     0.607
Cseg_2813
PFAM: ATPase MipZ; KEGG: ccs:CCNA_02246 division plane positioning ATPase MipZ.
  
     0.590
Cseg_4238
PFAM: Protein of unknown function DUF2159, secreted; KEGG: ccs:CCNA_03866 hypothetical protein.
  
     0.544
Cseg_3129
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_02430 conserved cytosolic protein; Belongs to the UPF0262 family.
  
   
 0.492
Cseg_2161
PFAM: protein of unknown function DUF583; KEGG: ccs:CCNA_01949 cytosolic protein.
  
     0.475
Cseg_1469
TIGRFAM: penicillin-binding protein 2; KEGG: ccs:CCNA_01615 cell elongation specific D,D-transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
     0.470
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.