STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3996KEGG: ccs:CCNA_00161 hypothetical protein. (194 aa)    
Predicted Functional Partners:
Cseg_3995
PFAM: Protein of unknown function DUF2320; KEGG: ccs:CCNA_00162 hypothetical protein.
     
 0.756
Cseg_3994
TIGRFAM: capsular exopolysaccharide family; KEGG: ccs:CCNA_00163 chain length regulator/tyrosine-protein kinase (capsular polysaccharide biosynthesis); PFAM: lipopolysaccharide biosynthesis protein.
     
 0.687
Cseg_3993
PFAM: O-antigen polymerase; KEGG: ccs:CCNA_00164 O-antigen polymerase.
       0.478
Cseg_2703
PFAM: Stress-induced protein, KGG, repeat; KEGG: ccs:CCNA_01236 cytosolic protein.
      
 0.428
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.