STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_4053KEGG: ccs:CCNA_03681 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (292 aa)    
Predicted Functional Partners:
Cseg_4052
KEGG: ccs:CCNA_03680 aminopeptidase N.
 
   0.954
Cseg_3083
KEGG: ccs:CCNA_01587 ABC transporter permease protein.
  
 
 0.767
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.545
Cseg_4055
TIGRFAM: maleylacetoacetate isomerase; KEGG: ccs:CCNA_03683 maleylpyruvate isomerase; PFAM: Glutathione S-transferase domain.
   
   0.523
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
   0.519
Cseg_4056
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.506
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.501
Cseg_4054
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ccs:CCNA_03682 fumarylpyruvate hydrolase.
       0.493
Cseg_0268
KEGG: ccs:CCNA_03533 multidrug resistance ABC transporter ATP-binding and permease protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
0.474
Cseg_0649
TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: ccs:CCNA_03383 multidrug/protein/lipid ABC transporter family, ATP-binding and permease protein; SMART: AAA ATPase.
 
0.472
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.