STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_4107PFAM: Carbohydrate-selective porin OprB; KEGG: ccs:CCNA_02982 porin. (396 aa)    
Predicted Functional Partners:
Cseg_3617
PFAM: OmpA/MotB domain protein; surface antigen msp4 family protein; KEGG: ccs:CCNA_00784 heat resistant agglutinin.
     
 0.628
Cseg_3911
PFAM: OmpA/MotB domain protein; KEGG: ccs:CCNA_03609 cell surface antigen Sca2.
     
 0.628
Cseg_0877
KEGG: ccs:CCNA_00880 hypothetical protein.
  
     0.504
Cseg_2700
KEGG: ccs:CCNA_01238 EF-hand domain protein.
  
     0.481
Cseg_0904
PFAM: peptidase S41; KEGG: ccs:CCNA_00686 peptidase family S41 protein.
  
     0.475
Cseg_3106
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02412 TonB protein.
 
   
 0.474
Cseg_0465
PFAM: glycoside hydrolase family 68; KEGG: cak:Caul_0964 levansucrase; Belongs to the glycosyl hydrolase 68 family.
  
   
 0.471
Cseg_2884
KEGG: ccs:CCNA_02316 hypothetical protein.
  
     0.462
Cseg_1235
KEGG: ccs:CCNA_01163 ice nucleation protein.
  
     0.446
Cseg_0082
KEGG: ccs:CCNA_00085 dienelactone hydrolase-related protein.
  
     0.445
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.