STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_4177KEGG: ccs:CCNA_03779 cytosolic protein. (110 aa)    
Predicted Functional Partners:
Cseg_0527
PFAM: nitrogen-fixing NifU domain protein; KEGG: ccs:CCNA_00494 transport protein.
  
     0.737
Cseg_3383
PFAM: protein of unknown function DUF1153; KEGG: cak:Caul_1011 hypothetical protein.
  
     0.722
Cseg_2595
KEGG: ccs:CCNA_01685 hemimethylated DNA-binding protein YccV; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region.
 
     0.709
Cseg_3132
KEGG: ccs:CCNA_02434 cytosolic protein.
  
     0.685
Cseg_2897
PFAM: GcrA cell cycle regulator; KEGG: ccs:CCNA_02328 hypothetical protein.
  
     0.679
Cseg_2888
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: ccs:CCNA_02320 deoxycytidine triphosphate deaminase.
  
     0.678
Cseg_1930
KEGG: ccr:CC_1451 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
  
     0.667
Cseg_1218
PFAM: protein of unknown function DUF1476; KEGG: ccs:CCNA_02575 cytosolic protein.
  
     0.657
Cseg_0102
PFAM: protein of unknown function DUF1674; KEGG: ccs:CCNA_00102 cytosolic protein.
  
     0.596
Cseg_4029
PFAM: Protein of unknown function DUF2328; KEGG: ccs:CCNA_03584 histidine phosphotransferase ChpT.
  
     0.596
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.