STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_4193PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cak:Caul_4865 endonuclease/exonuclease/phosphatase. (319 aa)    
Predicted Functional Partners:
Cseg_4192
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: cak:Caul_4864 glutathione-dependent formaldehyde-activating GFA.
       0.773
Cseg_2533
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2711 TonB-dependent receptor.
  
     0.736
Cseg_2373
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2711 TonB-dependent receptor.
  
     0.734
Cseg_2148
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.648
Cseg_0887
Transcriptional regulator, LuxR family; KEGG: pzu:PHZ_c2219 hypothetical protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
  
     0.644
Cseg_1880
KEGG: pzu:PHZ_c0700 6-pyruvoyl tetrahydrobiopterin synthase.
  
     0.634
Cseg_0937
KEGG: cak:Caul_4289 hypothetical protein.
  
     0.621
Cseg_1186
Beta-lactamase; KEGG: cak:Caul_3523 beta-lactamase.
  
     0.621
Cseg_0480
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c0623 TonB-dependent receptor.
  
     0.598
Cseg_1525
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: cak:Caul_1647 activator of HSP90 ATPase 1 family protein.
  
     0.586
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.