Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KGL30413.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.826
mqnA
Menaquinone biosynthesis protein; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).
 
     0.772
KGL30641.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
KGL30887.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.768
KGL30984.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
KGL30032.1
Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.761
bamD
Competence protein ComL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
KGL30836.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
KGL30318.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
KGL30211.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
Your Current Organism:
Helicobacter trogontum
NCBI taxonomy Id: 50960
Other names: ATCC 700114, CCUG 49050, Flexispira taxon 6, H. trogontum, Helicobacter sp. ATCC 43966, Helicobacter sp. ATCC 43968, Helicobacter sp. ATCC 49310, LRB 8581
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