Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGL30471.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (903 aa)    
Predicted Functional Partners:
KGL31548.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.576
KGL31715.1
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  0.576
KGL31952.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.560
KGL31577.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.552
KGL30472.1
DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
KGL31314.1
Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
   0.480
KGL31616.1
ArsC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
   0.480
KGL31144.1
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.437
KGL30378.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.411
KGL30609.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.411
Your Current Organism:
Helicobacter trogontum
NCBI taxonomy Id: 50960
Other names: ATCC 700114, CCUG 49050, Flexispira taxon 6, H. trogontum, Helicobacter sp. ATCC 43966, Helicobacter sp. ATCC 43968, Helicobacter sp. ATCC 49310, LRB 8581
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