Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KGL30499.1Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)    
Predicted Functional Partners:
KGL31823.1
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.998
KGL30500.1
Hemin transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
KGL30501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.811
KGL30498.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.660
KGL31976.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.616
KGL30732.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.596
KGL30124.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.529
KGL31049.1
Hemin uptake system outer membrane receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.450
lptB
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.443
Your Current Organism:
Helicobacter trogontum
NCBI taxonomy Id: 50960
Other names: ATCC 700114, CCUG 49050, Flexispira taxon 6, H. trogontum, Helicobacter sp. ATCC 43966, Helicobacter sp. ATCC 43968, Helicobacter sp. ATCC 49310, LRB 8581
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