Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KGL30552.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)    
Predicted Functional Partners:
fliS
Flagellar biosynthesis protein FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.853
msrA
Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
    
   0.536
KGL31945.1
Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
    
   0.535
KGL31662.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.535
KGL31666.1
Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
    
   0.535
KGL29538.1
FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.535
KGL30551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
KGL30549.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.431
Your Current Organism:
Helicobacter trogontum
NCBI taxonomy Id: 50960
Other names: ATCC 700114, CCUG 49050, Flexispira taxon 6, H. trogontum, Helicobacter sp. ATCC 43966, Helicobacter sp. ATCC 43968, Helicobacter sp. ATCC 49310, LRB 8581
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