Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tssCType VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)    
Predicted Functional Partners:
tssB
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KGL29910.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
KGL29869.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
tssF
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
KGL31800.1
glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
tssM
Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.934
tssK
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.933
KGL31793.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.921
KGL30231.1
Major exported protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.917
KGL29725.1
Major exported protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.917
Your Current Organism:
Helicobacter trogontum
NCBI taxonomy Id: 50960
Other names: ATCC 700114, CCUG 49050, Flexispira taxon 6, H. trogontum, Helicobacter sp. ATCC 43966, Helicobacter sp. ATCC 43968, Helicobacter sp. ATCC 49310, LRB 8581
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