Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KGL30057.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.815
KGL29859.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
KGL31775.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
KGL29793.1
vgrG protein VCA0123; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
KGL29986.1
Host-nuclease inhibitor protein Gam; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
KGL29950.1
Host-nuclease inhibitor protein Gam; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
KGL29684.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
KGL31627.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.744
tssM
Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.738
KGL29914.1
Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.738
Your Current Organism:
Helicobacter trogontum
NCBI taxonomy Id: 50960
Other names: ATCC 700114, CCUG 49050, Flexispira taxon 6, H. trogontum, Helicobacter sp. ATCC 43966, Helicobacter sp. ATCC 43968, Helicobacter sp. ATCC 49310, LRB 8581
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