STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETZ20216.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (209 aa)    
Predicted Functional Partners:
ETZ20217.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
      0.896
ETZ24333.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the alkaline phosphatase family.
   
 0.885
ETZ19987.1
Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 
 0.834
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.831
ETZ23779.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.824
ETZ19958.1
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.797
ETZ24225.1
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.797
ETZ23340.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.797
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.740
nuoA
NADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
   
   0.727
Your Current Organism:
Pedobacter sp. V48
NCBI taxonomy Id: 509635
Other names: P. sp. V48
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