STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETZ24443.1Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (423 aa)    
Predicted Functional Partners:
ETZ24442.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    0.925
ETZ24441.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.748
ETZ24444.1
Methyltransferase type 12; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.681
ETZ24570.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    0.672
ETZ24445.1
Sugar transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    0.657
glgB
Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.645
ETZ22327.1
Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 
 0.634
ETZ19567.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.563
ETZ22559.1
Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.563
ETZ19501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.400
Your Current Organism:
Pedobacter sp. V48
NCBI taxonomy Id: 509635
Other names: P. sp. V48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.