STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETZ22458.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (442 aa)    
Predicted Functional Partners:
ETZ22459.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     0.995
ETZ22926.1
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.959
ETZ22654.1
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.959
recA
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
 0.892
ETZ19342.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.845
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
 0.845
ETZ19653.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.790
ETZ20788.1
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.783
leuS
leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.743
ETZ20810.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.720
Your Current Organism:
Pedobacter sp. V48
NCBI taxonomy Id: 509635
Other names: P. sp. V48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.