STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP4_1U4/U6 small nuclear ribonucleoprotein prp4. (838 aa)    
Predicted Functional Partners:
MPDQ_002497
TPR_REGION domain-containing protein.
    
 
 0.845
MPDQ_007650
Uncharacterized protein.
   
  0.837
MPDQ_007091
Pinin_SDK_memA domain-containing protein.
   
  0.812
MPDQ_000130
Uncharacterized protein.
   
  0.811
MPDQ_004119
Tr-type G domain-containing protein.
    
 
 0.805
MPDQ_007191
SF3b1 domain-containing protein.
   
 
 0.802
PRP8
Pre-mRNA-splicing factor 8.
    
 
 0.797
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
   0.792
MPDQ_002739
Uncharacterized protein.
   
  0.781
MPDQ_006634
Rick_17kDa_Anti domain-containing protein.
   
  0.781
Your Current Organism:
Monascus purpureus
NCBI taxonomy Id: 5098
Other names: ATCC 16361 [[Monascus araneosus]], ATCC 16365, ATCC 16367 [[Monascus rubiginosus]], ATCC 16426, CBS 109.07, CBS 284.34 [[Monascus araneosus]], CBS 288.34 [[Monascus rubiginosus]], CECT 2955, FRR 2190 [[Monascus araneosus]], IFO 4482 [[Monascus araneosus]], IFO 4484 [[Monascus rubiginosus]], IFO 4513, IMI 210765, M. purpureus, Monascus albidus, Monascus anka, Monascus araneosus, Monascus purpurea, Monascus rubiginosus
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