STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MPDQ_002375RNB domain-containing protein. (1065 aa)    
Predicted Functional Partners:
CSL4
Exosome 3'->5 exonuclease subunit ski4 (Csl4).
   
 0.948
MPDQ_003647
Uncharacterized protein.
   
 0.947
SUV3
RNA helicase.
   
 
 0.947
MPDQ_005720
RNase_PH domain-containing protein.
   
 0.944
MPDQ_004593
RNase_PH domain-containing protein.
   
 0.939
MTR4
ATP-dependent RNA helicase mtr4.
   
 0.935
RRP40
Exosome non-catalytic core subunit rrp40.
   
 0.935
RRP4
Exosome non-catalytic core subunit rrp4.
    
 0.933
MPDQ_006801
Uncharacterized protein.
   
 0.933
SKI6
Exosome non-catalytic core component.
   
 0.929
Your Current Organism:
Monascus purpureus
NCBI taxonomy Id: 5098
Other names: ATCC 16361 [[Monascus araneosus]], ATCC 16365, ATCC 16367 [[Monascus rubiginosus]], ATCC 16426, CBS 109.07, CBS 284.34 [[Monascus araneosus]], CBS 288.34 [[Monascus rubiginosus]], CECT 2955, FRR 2190 [[Monascus araneosus]], IFO 4482 [[Monascus araneosus]], IFO 4484 [[Monascus rubiginosus]], IFO 4513, IMI 210765, M. purpureus, Monascus albidus, Monascus anka, Monascus araneosus, Monascus purpurea, Monascus rubiginosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.