A0A4Y7Q508 protein (Rickenella mellea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Y7Q508

ARM repeat-containing protein. (1080 aa)

Predicted Functional Partners:

A0A4Y7QC18

0.947

A0A4Y7Q9G9

0.943

A0A4R5XFY3

0.937

A0A4Y7QJ20

0.909

A0A4Y7Q6Z4

0.896

A0A4Y7PLE4

0.875

A0A4V3AZM3

0.872

A0A4Y7QHM8

0.872

A0A4Y7PZA0

0.870

A0A4Y7QGA4

0.868

Your Current Organism:

Rickenella mellea

NCBI taxonomy Id: 50990
Other names: R. mellea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4R5XFY3	A0A4Y7PLE4	Uncharacterized protein.	ARM repeat-containing protein.	0.937
A0A4R5XFY3	A0A4Y7Q508	Uncharacterized protein.	ARM repeat-containing protein.	0.937
A0A4R5XFY3	A0A4Y7Q6Z4	Uncharacterized protein.	ARM repeat-containing protein.	0.822
A0A4R5XFY3	A0A4Y7QC18	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.995
A0A4R5XFY3	A0A4Y7QGA4	Uncharacterized protein.	NUC173-domain-containing protein.	0.472
A0A4R5XFY3	A0A4Y7QHM8	Uncharacterized protein.	ARM repeat-containing protein.	0.997
A0A4V3AZM3	A0A4Y7PLE4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ARM repeat-containing protein.	0.755
A0A4V3AZM3	A0A4Y7PZA0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	GMP synthase.	0.824
A0A4V3AZM3	A0A4Y7Q508	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ARM repeat-containing protein.	0.872
A0A4V3AZM3	A0A4Y7Q6Z4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ARM repeat-containing protein.	0.613
A0A4V3AZM3	A0A4Y7Q9G9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	F-box domain-containing protein.	0.743
A0A4V3AZM3	A0A4Y7QGA4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	NUC173-domain-containing protein.	0.884
A0A4Y7PLE4	A0A4R5XFY3	ARM repeat-containing protein.	Uncharacterized protein.	0.937
A0A4Y7PLE4	A0A4V3AZM3	ARM repeat-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.755
A0A4Y7PLE4	A0A4Y7PZA0	ARM repeat-containing protein.	GMP synthase.	0.767
A0A4Y7PLE4	A0A4Y7Q508	ARM repeat-containing protein.	ARM repeat-containing protein.	0.875
A0A4Y7PLE4	A0A4Y7Q6Z4	ARM repeat-containing protein.	ARM repeat-containing protein.	0.891
A0A4Y7PLE4	A0A4Y7Q9G9	ARM repeat-containing protein.	F-box domain-containing protein.	0.920
A0A4Y7PLE4	A0A4Y7QC18	ARM repeat-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.955
A0A4Y7PLE4	A0A4Y7QGA4	ARM repeat-containing protein.	NUC173-domain-containing protein.	0.749