STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO090012000580Nup188_C domain-containing protein. (1819 aa)    
Predicted Functional Partners:
AO090206000014
Nuclear pore protein.
   
 0.999
AO090003001114
Peptidase S59 domain-containing protein.
   
 0.971
AO090001000301
Nup54 domain-containing protein.
    
 0.964
AO090005000465
Uncharacterized protein.
   
 0.961
AO090672000002
Uncharacterized protein.
  
 0.930
AO090038000387
Uncharacterized protein.
  
 0.915
AO090038000325
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.834
AO090005001624
WD_REPEATS_REGION domain-containing protein.
    
 0.831
sec13
Protein transport protein sec13; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport facto [...]
    
 0.815
AO090003000296
ANAPC4_WD40 domain-containing protein.
    
 
 0.814
Your Current Organism:
Aspergillus oryzae
NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40
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