STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO090005001523Sm domain-containing protein. (118 aa)    
Predicted Functional Partners:
AO090003000513
N-acetyltransferase domain-containing protein.
    
 0.990
AO090120000397
Small nuclear ribonucleoprotein Sm D2.
   
 0.964
AO090038000569
Uncharacterized protein.
   
 0.962
AO090005000646
Small nuclear ribonucleoprotein G.
   
 0.954
AO090026000751
Uncharacterized protein.
   
 0.944
AO090103000011
Tr-type G domain-containing protein.
   
 0.936
prp5
Pre-mRNA-processing ATP-dependent RNA helicase prp5; ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA (By similarity); Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
    
 0.925
AO090102000651
PSP domain-containing protein.
   
 0.922
AO090026000655
JAB_MPN domain-containing protein.
   
 0.919
AO090005000696
Uncharacterized protein.
   
 0.919
Your Current Organism:
Aspergillus oryzae
NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40
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