STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G4UKL7_NEUT9tRNA ligase. (840 aa)    
Predicted Functional Partners:
G4U572_NEUT9
Yae1_N domain-containing protein.
   
  
 0.600
G4UMQ7_NEUT9
Uncharacterized protein.
      
 0.592
G4UQY6_NEUT9
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
      
 0.591
G4UY32_NEUT9
Uncharacterized protein.
      
 0.591
G4ULC5_NEUT9
tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...]
      
 0.590
G4UZG7_NEUT9
2',3'-cyclic-nucleotide 3'-phosphodiesterase.
      
 0.589
G4UTS0_NEUT9
tRNA_int_end_N2 domain-containing protein.
      
 0.588
G4URL7_NEUT9
Sen15 domain-containing protein.
      
 0.554
G4U5G0_NEUT9
BZIP domain-containing protein.
      
 0.543
G4UBX4_NEUT9
ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family.
      
 0.454
Your Current Organism:
Neurospora tetrasperma
NCBI taxonomy Id: 510952
Other names: N. tetrasperma FGSC 2509, Neurospora tetrasperma FGSC 2509
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