G4UG78_NEUT9 protein (Neurospora tetrasperma)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G4UG78_NEUT9

BZIP domain-containing protein. (560 aa)

Predicted Functional Partners:

G4UI89_NEUT9

0.939

G4URZ3_NEUT9

0.812

G4UZ29_NEUT9

0.775

G4UMW0_NEUT9

0.759

G4UH50_NEUT9

0.715

G4UEH1_NEUT9

0.633

G4UVH4_NEUT9

0.601

G4US82_NEUT9

0.560

G4V1W5_NEUT9

0.551

G4UMD1_NEUT9

0.536

Your Current Organism:

Neurospora tetrasperma

NCBI taxonomy Id: 510952
Other names: N. tetrasperma FGSC 2509, Neurospora tetrasperma FGSC 2509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4UEH1_NEUT9	G4UG78_NEUT9	G4UEH1	G4UG78	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.633
G4UEH1_NEUT9	G4UH50_NEUT9	G4UEH1	G4UH50	Mitogen-activated protein kinase.	Uncharacterized protein.	0.518
G4UEH1_NEUT9	G4UI89_NEUT9	G4UEH1	G4UI89	Mitogen-activated protein kinase.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.535
G4UEH1_NEUT9	G4UVH4_NEUT9	G4UEH1	G4UVH4	Mitogen-activated protein kinase.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.418
G4UEH1_NEUT9	G4UZ29_NEUT9	G4UEH1	G4UZ29	Mitogen-activated protein kinase.	Cross-pathway control protein 1.	0.468
G4UG78_NEUT9	G4UEH1_NEUT9	G4UG78	G4UEH1	BZIP domain-containing protein.	Mitogen-activated protein kinase.	0.633
G4UG78_NEUT9	G4UH50_NEUT9	G4UG78	G4UH50	BZIP domain-containing protein.	Uncharacterized protein.	0.715
G4UG78_NEUT9	G4UI89_NEUT9	G4UG78	G4UI89	BZIP domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.939
G4UG78_NEUT9	G4UMD1_NEUT9	G4UG78	G4UMD1	BZIP domain-containing protein.	DHR10 domain-containing protein.	0.536
G4UG78_NEUT9	G4UMW0_NEUT9	G4UG78	G4UMW0	BZIP domain-containing protein.	Transcriptional repressor rco-1.	0.759
G4UG78_NEUT9	G4URZ3_NEUT9	G4UG78	G4URZ3	BZIP domain-containing protein.	TPR-like protein.	0.812
G4UG78_NEUT9	G4US82_NEUT9	G4UG78	G4US82	BZIP domain-containing protein.	Uncharacterized protein.	0.560
G4UG78_NEUT9	G4UVH4_NEUT9	G4UG78	G4UVH4	BZIP domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.601
G4UG78_NEUT9	G4UZ29_NEUT9	G4UG78	G4UZ29	BZIP domain-containing protein.	Cross-pathway control protein 1.	0.775
G4UG78_NEUT9	G4V1W5_NEUT9	G4UG78	G4V1W5	BZIP domain-containing protein.	PAP1-domain-containing protein.	0.551
G4UH50_NEUT9	G4UEH1_NEUT9	G4UH50	G4UEH1	Uncharacterized protein.	Mitogen-activated protein kinase.	0.518
G4UH50_NEUT9	G4UG78_NEUT9	G4UH50	G4UG78	Uncharacterized protein.	BZIP domain-containing protein.	0.715
G4UH50_NEUT9	G4UVH4_NEUT9	G4UH50	G4UVH4	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.478
G4UH50_NEUT9	G4UZ29_NEUT9	G4UH50	G4UZ29	Uncharacterized protein.	Cross-pathway control protein 1.	0.468
G4UI89_NEUT9	G4UEH1_NEUT9	G4UI89	G4UEH1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mitogen-activated protein kinase.	0.535