STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO37331.1Hydantoin racemase HyuE; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
ALO40236.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.720
ALO37330.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.687
ALO37332.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.679
puuE
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.670
ALO38384.1
Asp/Glu racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.631
ALO37247.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.597
ALO40031.1
N-carbamoyl-D-amino acid hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.555
ALO38381.1
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.517
uraD
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.501
ALO40483.1
Dihydroorotase; Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.455
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Achromobacter sp. ATCC8750, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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