STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspFType II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)    
Predicted Functional Partners:
gspE
Type II secretion system protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 0.999
gspG
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
gspI
Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.984
gspD
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.971
gspH
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.956
ALO37612.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.942
ALO37613.1
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.919
ALO37080.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase A24 family.
 
  
 0.872
ALO37614.1
HxcW pseudopilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.860
ALO37610.1
General secretion pathway protein GspN; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.798
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Achromobacter sp. ATCC8750, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.