Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALO37629.1IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)    
Predicted Functional Partners:
ALO38670.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
ALO37771.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
ALO37815.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
ALO38636.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.721
ALO37630.1
Damage-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.660
ALO39601.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
ALO37631.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.588
ALO37628.1
Phasin (PHA-granule associated protein); Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.528
ALO37632.1
Thiol-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.524
ALO39137.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.459
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Achromobacter sp. ATCC8750, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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