Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALO39182.1Nitric oxide reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (759 aa)    
Predicted Functional Partners:
nosZ
Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
   
 
 0.990
ALO37062.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.978
nirK
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase family.
 
  
 0.964
ALO39000.1
4Fe-4S binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.958
ALO40220.1
Cytochrome c class I NirC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.912
ALO37057.1
Protein nirG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.844
coxB
Cytochrome C oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.840
ALO37058.1
Protein nirH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.837
ccoP
Cytochrome oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.810
ALO40399.1
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.777
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Achromobacter sp. ATCC8750, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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