Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALO40434.1CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)    
Predicted Functional Partners:
ALO39347.1
cys-tRNA(pro)/cys-tRNA(cys) deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
ALO39348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.506
ALO38325.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.505
ALO40100.1
Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.481
ALO39640.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.453
ALO40136.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.443
ALO38790.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.430
ALO39876.1
Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.429
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Achromobacter sp. ATCC8750, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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