STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdhBL-serine dehydratase, beta chain; Protein synonym:L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family. (224 aa)    
Predicted Functional Partners:
sdhA
L-serine dehydratase, alpha chain; Protein synonym:L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
  0.999
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
 0.955
cysE
Putative serine acetyltransferase.
     
 0.912
CSE_12940
Aminotransferase.
    
 0.910
thrA
Bifunctional aspartokinase/homoserine dehydrogenase; Bifunctional protein.
  
 
 0.858
CSE_05090
Hypothetical protein.
       0.562
CSE_05060
Hypothetical protein.
       0.554
CSE_05050
Hypothetical protein.
       0.512
CSE_05040
Hypothetical protein.
       0.482
Your Current Organism:
Caldisericum exile
NCBI taxonomy Id: 511051
Other names: C. exile AZM16c01, Caldisericum exile AZM16c01, filamentous bacterium AZM16c01
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