STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSE_12310Hypothetical protein. (417 aa)    
Predicted Functional Partners:
CSE_12320
Hypothetical protein.
       0.773
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.725
CSE_12330
Hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.581
CSE_05440
ABC transporter permease protein.
    
  0.496
CSE_02970
Putative oligopeptide ABC transporter substrate binding protein.
    
  0.494
CSE_09220
Putative dipeptide ABC transporter substrate-binding protein.
    
  0.494
CSE_11710
Oligopeptide ABC transporter substrate binding protein.
    
  0.494
CSE_00920
Putative ABC transporter permease protein.
    
  0.471
CSE_00930
Putative ABC transporter permease protein.
    
  0.471
CSE_01150
Putative ABC transporter permease protein.
    
  0.471
Your Current Organism:
Caldisericum exile
NCBI taxonomy Id: 511051
Other names: C. exile AZM16c01, Caldisericum exile AZM16c01, filamentous bacterium AZM16c01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.