STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GU3_06385COG3308 Predicted membrane protein. (125 aa)    
Predicted Functional Partners:
GU3_06390
Hypothetical protein; COG1393 Arsenate reductase and related proteins, glutaredoxin family.
       0.800
GU3_10875
Hypothetical protein.
  
     0.772
GU3_11205
Hypothetical protein.
  
     0.770
GU3_05065
Type IV pilus assembly PilZ.
  
     0.767
GU3_10650
DNA repair ATPase.
  
     0.762
GU3_04670
Sodium-type flagellar motor component; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.761
GU3_09215
Hypothetical protein.
  
     0.761
GU3_03750
Hypothetical protein.
  
     0.752
GU3_10265
COG4736 Cbb3-type cytochrome oxidase, subunit 3.
  
     0.742
GU3_03345
Hypothetical protein.
  
     0.736
Your Current Organism:
Oceanimonas sp. GK1
NCBI taxonomy Id: 511062
Other names: O. sp. GK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.