STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GU3_08945COG2989 Uncharacterized protein conserved in bacteria. (443 aa)    
Predicted Functional Partners:
GU3_13475
COG3108 Uncharacterized protein conserved in bacteria.
 
     0.777
GU3_08940
Hypothetical protein.
       0.618
mepA
Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.547
GU3_08770
COG3034 Uncharacterized protein conserved in bacteria.
  
   
 0.470
GU3_11220
COG1376 Uncharacterized protein conserved in bacteria.
 
  
 0.447
asnC
COG0017 Aspartyl/asparaginyl-tRNA synthetases.
       0.441
Your Current Organism:
Oceanimonas sp. GK1
NCBI taxonomy Id: 511062
Other names: O. sp. GK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.