STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GU3_09630Fimbrial assembly family protein. (192 aa)    
Predicted Functional Partners:
GU3_09625
MSHA biogenesis protein MshI; COG0420 DNA repair exonuclease.
  
 
 0.954
GU3_14955
COG3167 Tfp pilus assembly protein PilO.
  
 
 0.927
GU3_14950
Type IV pilus biogenesis protein TapP; COG3168 Tfp pilus assembly protein PilP.
  
 
 0.922
GU3_14945
Type IV pilus secretin PilQ; COG4796 Type II secretory pathway, component HofQ.
  
 
 0.910
GU3_09655
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
 
 0.901
GU3_09660
GspF family protein; COG1459 Type II secretory pathway, component PulF.
   
 
 0.852
GU3_09645
MSHA biogenesis protein MshL; COG1450 Type II secretory pathway, component PulD.
     
 0.834
GU3_09635
MSHA biogenesis protein MshJ.
     
 0.802
GU3_09640
MSHA biogenesis protein MshK.
       0.800
GU3_09650
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.800
Your Current Organism:
Oceanimonas sp. GK1
NCBI taxonomy Id: 511062
Other names: O. sp. GK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.