STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yagNUncharacterized protein YagN; Phage or Prophage Related (146 aa)    
Predicted Functional Partners:
ykfA
To E.coli YfjP and YeeP
      
 0.873
yagG
Putative glycoside/cation symporter YagG; Putative permease
      
 0.825
stfQ
Prophage side tail fiber protein homolog StfQ; Phage or Prophage Related; Belongs to the tail fiber family
      
 0.738
ytfR
Part of the ABC transporter complex YtfQRT-YjfF involved in galactofuranose transport (Probable). Responsible for energy coupling to the transport system (Probable)
      
 0.730
intF
Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome
  
    0.713
rsxC
Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required to maintain the reduced state of SoxR. Probably transfers electron from NAD(P)H to SoxR .
      
 0.604
mdlB
Belongs to the ABC transporter superfamily. Drug exporter-2 (TC 3.A.1.117) family
      
 0.579
ydiQ
May play a role in a redox process
      
 0.483
ygdR
annotation not available
      
 0.429
yagM
Uncharacterized protein YagM; Phage or Prophage Related
       0.402
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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