STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaiVPutative dna-binding transcriptional regulator ipra; Involved in oxidative stress resistance (207 aa)    
Predicted Functional Partners:
yobB
Uncharacterized protein YobB; Putative enzyme; Not classified
  
     0.726
yaiY
annotation not available
  
     0.712
ydiE
Hemin uptake protein hemp homolog; To Y.enterocolitica HemP
  
     0.699
hofM
Dna catabolic putative pilus assembly protein; Required for the use of extracellular DNA as a nutrient
  
     0.684
ybgS
Putative periplasmic protein; Uncharacterized protein YbgS; Putative homeobox protein
  
     0.683
yajI
annotation not available
  
 
   0.680
yjeJ
annotation not available
  
     0.672
hofO
Dna utilization protein hofo; Required for the use of extracellular DNA as a nutrient
  
     0.667
ysaB
annotation not available
  
     0.660
torZ
Trimethylamine n-oxide reductase system iii, catalytic subunit; Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions. Can also reduce other N- and S-oxide compounds such as 4-methylmorpholine-N- oxide and biotin sulfoxide (BSO), but with a lower catalytic efficiency
   
  
 0.659
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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