STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybcVDLP12 prophage; Putative an envelop protein. (136 aa)    
Predicted Functional Partners:
ybcW
DLP12 prophage; uncharacterized protein.
  
  
 0.877
ymgC
Blue light, low temperature and stress induced protein.
      
 0.600
yfdN
Uncharacterized protein YfdN; CPS-53 (KpLE1) prophage; putative methyltransferase;Phage or Prophage Related.
      
 0.528
tfaQ
Qin prophage; Tail fiber assembly protein homolog from lambdoid prophage Qin; Belongs to the tfa family.
      
 0.523
smg
DUF494 family putative periplasmic protein; Belongs to the Smg family.
      
 0.521
ylcG
Uncharacterized protein, DLP12 prophage.
      
 0.519
ycbJ
Protein kinase-like domain protein.
      
 0.507
ydcJ
Putative metalloenzyme; To M.tuberculosis Rv3292.
      
 0.507
ygcW
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.507
ynbD
Putative phosphatase inner membrane protein; Putative enzymes; Belongs to the protein-tyrosine phosphatase family.
      
 0.501
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.