STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybcVUncharacterized protein YbcV; Putative an envelop protein (136 aa)    
Predicted Functional Partners:
ymgC
annotation not available
      
 0.731
yfdN
Uncharacterized protein YfdN; CPS-53 (KpLE1) prophage; putative methyltransferase;Phage or Prophage Related
      
 0.678
ycbJ
annotation not available
      
 0.672
ydcJ
Uncharacterized protein YdcJ; Putative enzyme; Not classified; To M.tuberculosis Rv3292
      
 0.641
yfeD
annotation not available
      
 0.640
smg
Belongs to the Smg family
      
 0.640
yfjR
Uncharacterized HTH-type transcriptional regulator YfjR; Phage or Prophage Related
      
 0.620
stfR
Prophage side tail fiber protein homolog StfR; Phage or Prophage Related; Belongs to the tail fiber family
      
 0.607
tfaQ
Belongs to the tfa family
      
 0.605
ylcG
Uncharacterized protein YlcG; Phage or Prophage Related; To equivalent protein in phage 82
      
 0.604
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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