Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| nfrA | nfrB | b0568 | b0569 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | Bacteriophage n4 receptor, inner membrane subunit; Required for bacteriophage N4 adsorption. May be a component of the phage receptor | 0.994 |
| nfrA | sslE | b0568 | b4466 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | Putative secreted and surface-associated lipoprotein mucinase; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane | 0.645 |
| nfrA | yahC | b0568 | b0317 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | annotation not available | 0.684 |
| nfrA | ybcH | b0568 | b0567 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | annotation not available | 0.967 |
| nfrA | ydhQ | b0568 | b1664 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | Autotransporter adhesin-related protein; Uncharacterized protein YdhQ; Possible enzyme | 0.693 |
| nfrA | yfaL | b0568 | b2233 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | Putative autotransporter adhesin yfal; Probably an autotransporter | 0.741 |
| nfrA | yfbM | b0568 | b2272 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | annotation not available | 0.716 |
| nfrA | yjjJ | b0568 | b4385 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | Putative protein kinase; Toxic when overexpressed in E.coli, leading to long filamentous cells. The toxic effect is neutralized by non-cognate antitoxin HipB . Does not seem to inhibit DNA, RNA or protein synthesis, and unlike paralogous toxin HipA its toxic activity is not counteracted by overexpression of GltX . Binds DNA . Might be a protein kinase (By similarity) | 0.657 |
| nfrA | yliE | b0568 | b0833 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | Putative membrane-anchored cyclic-di-gmp phosphodiesterase; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic-di-GMP (c-di-GMP) to 5'-pGpG (By similarity). Overexpression reduces biofilm formation. Cyclic-di-GMP is a second messenger which controls cell surface-associated traits in bacteria | 0.660 |
| nfrA | ymfA | b0568 | b1122 | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | annotation not available | 0.757 |
| nfrB | nfrA | b0569 | b0568 | Bacteriophage n4 receptor, inner membrane subunit; Required for bacteriophage N4 adsorption. May be a component of the phage receptor | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | 0.994 |
| nfrB | ybcH | b0569 | b0567 | Bacteriophage n4 receptor, inner membrane subunit; Required for bacteriophage N4 adsorption. May be a component of the phage receptor | annotation not available | 0.973 |
| nfrB | ydhQ | b0569 | b1664 | Bacteriophage n4 receptor, inner membrane subunit; Required for bacteriophage N4 adsorption. May be a component of the phage receptor | Autotransporter adhesin-related protein; Uncharacterized protein YdhQ; Possible enzyme | 0.535 |
| sslE | nfrA | b4466 | b0568 | Putative secreted and surface-associated lipoprotein mucinase; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | 0.645 |
| sslE | yahC | b4466 | b0317 | Putative secreted and surface-associated lipoprotein mucinase; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane | annotation not available | 0.566 |
| sslE | ydhQ | b4466 | b1664 | Putative secreted and surface-associated lipoprotein mucinase; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane | Autotransporter adhesin-related protein; Uncharacterized protein YdhQ; Possible enzyme | 0.473 |
| sslE | yfaL | b4466 | b2233 | Putative secreted and surface-associated lipoprotein mucinase; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane | Putative autotransporter adhesin yfal; Probably an autotransporter | 0.830 |
| sslE | yfbM | b4466 | b2272 | Putative secreted and surface-associated lipoprotein mucinase; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane | annotation not available | 0.615 |
| sslE | ymfA | b4466 | b1122 | Putative secreted and surface-associated lipoprotein mucinase; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane | annotation not available | 0.599 |
| yahC | nfrA | b0317 | b0568 | annotation not available | Bacteriophage n4 receptor, outer membrane protein; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein | 0.684 |
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