STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjYannotation not available (225 aa)    
Predicted Functional Partners:
ydjX
Belongs to the TVP38/TMEM64 family
 
  
 0.990
ydhQ
Uncharacterized protein YdhQ; Possible enzyme
  
   
 0.954
ydjZ
Belongs to the TVP38/TMEM64 family
 
    0.948
ycbF
Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be required for the biogenesis of fimbriae
      
 0.888
ydhZ
In vitro catalyzes the addition of water to fumarate, forming malate. Cannot catalyze the reverse reaction. Cannot use the cis-isomer maleate as substrate
      
 0.874
ynjA
To M.tuberculosis Rv2313c
  
    0.874
ynjB
annotation not available
       0.863
ynjD
Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system
 
     0.847
yeaQ
annotation not available
      
 0.828
ydiH
annotation not available
      
 0.824
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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