Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| fic | ldtE | b3361 | b1678 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | 0.762 |
| fic | patA | b3361 | b3073 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4- aminobutanoate (gamma-aminobutyrate or GABA) via 4-aminobutanal, which allows E.coli to grow on putrescine as the sole nitrogen source . Also functions as a cadaverine transaminase in a a L-lysine degradation pathway to succinate that proceeds via cad [...] | 0.552 |
| fic | talA | b3361 | b2464 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway | 0.602 |
| fic | ycgB | b3361 | b1188 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | Spovr family stationary phase protein; To B.subtilis SpoVR | 0.764 |
| fic | yeaG | b3361 | b1783 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | Protein kinase, endogenous substrate unidentified; Belongs to the PrkA family | 0.843 |
| fic | yeaH | b3361 | b1784 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | DUF444 domain-containing protein YeaH; Belongs to the UPF0229 family | 0.747 |
| fic | yegP | b3361 | b2080 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | DUF1508 domain-containing protein YegP; Belongs to the UPF0339 family. Duplicated subfamily | 0.679 |
| fic | ygaM | b3361 | b2672 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | annotation not available | 0.739 |
| fic | yiaG | b3361 | b3555 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | HTH_CROC1 family putative transcriptional regulator; Uncharacterized HTH-type transcriptional regulator YiaG; Protein involved in regulation of transcription, DNA-dependent | 0.819 |
| fic | yodD | b3361 | b1953 | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | annotation not available | 0.743 |
| ldtE | fic | b1678 | b3361 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | 0.762 |
| ldtE | patA | b1678 | b3073 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4- aminobutanoate (gamma-aminobutyrate or GABA) via 4-aminobutanal, which allows E.coli to grow on putrescine as the sole nitrogen source . Also functions as a cadaverine transaminase in a a L-lysine degradation pathway to succinate that proceeds via cad [...] | 0.407 |
| ldtE | talA | b1678 | b2464 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway | 0.453 |
| ldtE | ycgB | b1678 | b1188 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | Spovr family stationary phase protein; To B.subtilis SpoVR | 0.734 |
| ldtE | yeaG | b1678 | b1783 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | Protein kinase, endogenous substrate unidentified; Belongs to the PrkA family | 0.777 |
| ldtE | yeaH | b1678 | b1784 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | DUF444 domain-containing protein YeaH; Belongs to the UPF0229 family | 0.760 |
| ldtE | yegP | b1678 | b2080 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | DUF1508 domain-containing protein YegP; Belongs to the UPF0339 family. Duplicated subfamily | 0.691 |
| ldtE | ygaM | b1678 | b2672 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | annotation not available | 0.539 |
| ldtE | yodD | b1678 | b1953 | Murein l,d-transpeptidase; Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link | annotation not available | 0.559 |
| patA | fic | b3073 | b3361 | putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4- aminobutanoate (gamma-aminobutyrate or GABA) via 4-aminobutanal, which allows E.coli to grow on putrescine as the sole nitrogen source . Also functions as a cadaverine transaminase in a a L-lysine degradation pathway to succinate that proceeds via cad [...] | Putative adenosine monophosphate--protein transferase fic; Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins (By similarity). Involved in cell filamentation induced by cyclic AMP. May have some role in cell division | 0.552 |
page 1 of 6
