STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypjAUncharacterized outer membrane protein YpjA; Putative ATP-binding component of a transport system (1526 aa)    
Predicted Functional Partners:
ybeR
To E.coli YbeU
  
   
 0.833
arpA
annotation not available
  
     0.781
ygeH
Uncharacterized protein YgeH; Putative invasion protein
  
    0.780
yqeI
To V.cholerae cholera toxin transcriptional activator (ToxR)
  
    0.764
stfQ
Prophage side tail fiber protein homolog StfQ; Phage or Prophage Related; Belongs to the tail fiber family
  
    0.763
yjhI
Uncharacterized HTH-type transcriptional regulator YjhI; Putative regulator; Protein involved in transcription repressor activity and transcription
      
 0.735
yfbM
annotation not available
  
   
 0.732
djlB
Uncharacterized J domain-containing protein DjlB; Putative enzyme of polynucleotide modification; Protein involved in protein folding
  
     0.719
yeeJ
Belongs to the intimin/invasin family
  
   
 0.716
rhsC
Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell
  
     0.712
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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