STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygcGannotation not available (290 aa)    
Predicted Functional Partners:
yqcG
annotation not available
       0.816
ychH
annotation not available
      
 0.734
bcp
Thioredoxin-dependent peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events
   
    0.724
yodD
annotation not available
      
 0.701
yaiA
annotation not available
      
 0.671
yfcH
Putative nad-dependent nucleotide-sugar epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. SDR39U1 subfamily
   
    0.654
yobF
annotation not available
      
 0.641
bsmA
DUF1471 domain-containing putative lipoprotein BsmA; Involved in protection of biofilms against oxidative stress
      
 0.640
yggE
Oxidative stress defense protein; Uncharacterized protein YggE; Putative actin
      
 0.578
queE
Putative 7-carboxy-7-deazaguanine synthase quee; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds
       0.566
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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