STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiiSannotation not available (99 aa)    
Predicted Functional Partners:
uspD
Universal stress protein D; Required for resistance to DNA-damaging agents
 
 
 0.993
yiiR
annotation not available
     
 0.820
yjbR
annotation not available
      
 0.744
yhiM
Inner membrane protein YhiM; Pseudogene, DUF4049 family protein
  
   
 0.742
slp
Outer membrane protein slp; The induction of slp may help to stabilize the outer membrane during carbon starvation and stationary phase
  
  
 0.706
ygeH
Uncharacterized protein YgeH; Putative invasion protein
      
 0.685
yqeK
annotation not available
      
 0.684
ynfB
annotation not available
  
   
 0.663
yjbQ
annotation not available
   
  
 0.662
yqhH
annotation not available
  
     0.655
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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