Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rsd | ytfK | b3995 | b4217 | Stationary phase protein, binds sigma 70 RNA polymerase subunit; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. Belongs to the Rsd/AlgQ family. | DUF1107 family protein. | 0.787 |
waaH | ytfK | b3615 | b4217 | LPS(HepIII)-glucuronic acid glycosyltransferase; Putative regulator; Belongs to the glycosyltransferase 2 family. | DUF1107 family protein. | 0.530 |
yaeH | yaiA | b0163 | b0389 | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | OxyR-regulated conserved protein. | 0.627 |
yaeH | ybjM | b0163 | b0848 | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | Inner membrane protein. | 0.730 |
yaeH | ytfK | b0163 | b4217 | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | DUF1107 family protein. | 0.560 |
yaiA | yaeH | b0389 | b0163 | OxyR-regulated conserved protein. | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | 0.627 |
yaiA | ytfK | b0389 | b4217 | OxyR-regulated conserved protein. | DUF1107 family protein. | 0.518 |
ybjM | yaeH | b0848 | b0163 | Inner membrane protein. | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | 0.730 |
ybjM | ytfK | b0848 | b4217 | Inner membrane protein. | DUF1107 family protein. | 0.530 |
yiaG | yjbJ | b3555 | b4045 | HTH_CROC1 family putative transcriptional regulator; Protein involved in regulation of transcription, DNA-dependent. | Stress-induced protein, UPF0337 family; Belongs to the UPF0337 (CsbD) family. | 0.538 |
yiaG | ytfK | b3555 | b4217 | HTH_CROC1 family putative transcriptional regulator; Protein involved in regulation of transcription, DNA-dependent. | DUF1107 family protein. | 0.487 |
yjbJ | yiaG | b4045 | b3555 | Stress-induced protein, UPF0337 family; Belongs to the UPF0337 (CsbD) family. | HTH_CROC1 family putative transcriptional regulator; Protein involved in regulation of transcription, DNA-dependent. | 0.538 |
yjbJ | yodC | b4045 | b1957 | Stress-induced protein, UPF0337 family; Belongs to the UPF0337 (CsbD) family. | Uncharacterized protein. | 0.508 |
yjbJ | ytfK | b4045 | b4217 | Stress-induced protein, UPF0337 family; Belongs to the UPF0337 (CsbD) family. | DUF1107 family protein. | 0.492 |
yjfN | ytfK | b4188 | b4217 | DUF1471 family periplasmic protein. | DUF1107 family protein. | 0.517 |
yodC | yjbJ | b1957 | b4045 | Uncharacterized protein. | Stress-induced protein, UPF0337 family; Belongs to the UPF0337 (CsbD) family. | 0.508 |
yodC | ytfK | b1957 | b4217 | Uncharacterized protein. | DUF1107 family protein. | 0.539 |
ytfJ | ytfK | b4216 | b4217 | Putative transcriptional regulator. | DUF1107 family protein. | 0.646 |
ytfK | rsd | b4217 | b3995 | DUF1107 family protein. | Stationary phase protein, binds sigma 70 RNA polymerase subunit; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. Belongs to the Rsd/AlgQ family. | 0.787 |
ytfK | waaH | b4217 | b3615 | DUF1107 family protein. | LPS(HepIII)-glucuronic acid glycosyltransferase; Putative regulator; Belongs to the glycosyltransferase 2 family. | 0.530 |
page 1 of 2