STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygcUBelongs to the FAD-binding oxidoreductase/transferase type 4 family (484 aa)    
Predicted Functional Partners:
ygcW
Belongs to the short-chain dehydrogenases/reductases (SDR) family
 
 
 0.838
ygcE
Uncharacterized sugar kinase YgcE; Putative enzyme; Not classified; Belongs to the FGGY kinase family
 
    0.828
yqcE
Inner membrane protein YqcE; Putative transport protein
 
    0.801
ygcS
Inner membrane metabolite transport protein YgcS; Putative transport protein
 
 
   0.783
ygcR
May play a role in a redox process
 
     0.768
ygcQ
May play a role in a redox process
 
   
 0.674
ygcP
Uncharacterized protein YgcP; Putative anti-terminator regulatory protein
 
     0.660
yahG
annotation not available
 
 
 0.491
lldD
Catalyzes the conversion of L-lactate to pyruvate. Seems to be a primary dehydrogenase in the respiratory chain. To a lesser extent, can also oxidize DL-alpha-hydroxybutyrate, but not D-lactate.
 
 
 0.463
yihN
Belongs to the major facilitator superfamily.
  
     0.457
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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