STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygcUPutative FAD-linked oxidoreductase; Belongs to the FAD-binding oxidoreductase/transferase type 4 family. (484 aa)    
Predicted Functional Partners:
ygcW
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   0.897
ygcE
Putative kinase; Belongs to the FGGY kinase family.
 
  
 0.831
ygcR
Putative flavoprotein; May play a role in a redox process.
 
 
 0.757
ygcS
Putative MFS sugar transporter; Putative transport protein.
     0.735
ygcQ
Putative flavoprotein; May play a role in a redox process; Belongs to the ETF alpha-subunit/FixB family.
 
 
 0.727
yqcE
Putative MFS transporter, inner membrane protein; Putative transport protein.
 
     0.647
ygcP
Putative anti-terminator regulatory protein.
 
     0.644
nuoC
NADH:ubiquinone oxidoreductase, fused CD subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
 0.617
mngB
Alpha-mannosidase; May hydrolyze 6-phospho-mannosyl-D-glycerate to mannose-6- phosphate and glycerate; Belongs to the glycosyl hydrolase 38 family.
  
    0.591
yggP
Putative Zn-binding dehydrogenase; To K.pneumoniae SorE.
  
    0.506
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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